sample description source host_species host_common_name cell_line subject_status tissue_cell_type treatment virus_strain timepoint_postTreament GEO_accession Series1_NHBE_Mock_1 SARS004-mock-3_S3 Mock treated NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells Mock treatment NA 24hrs GSM4432378 Series1_NHBE_Mock_2 SARS004-mock-2_S2 Mock treated NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells Mock treatment NA 24hrs GSM4432379 Series1_NHBE_Mock_3 SARS004-mock-1_S1 Mock treated NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells Mock treatment NA 24hrs GSM4432380 Series1_NHBE_SARS-CoV-2_1 SARS004-CoV2-3_S6 SARS-CoV-2 infected NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells SARS-CoV-2 infected (MOI 2) USA-WA1/2020 24hrs GSM4432381 Series1_NHBE_SARS-CoV-2_2 SARS004-CoV2-2_S5 SARS-CoV-2 infected NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells SARS-CoV-2 infected (MOI 2) USA-WA1/2020 24hrs GSM4432382 Series1_NHBE_SARS-CoV-2_3 SARS004-CoV2-1_S4 SARS-CoV-2 infected NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells SARS-CoV-2 infected (MOI 2) USA-WA1/2020 24hrs GSM4432383 Series2_A549_Mock_1 CoV002-mock3-indexG3_S3 Mock treated A549 cells homo_sapiens human A549 NA Lung adenocarcinoma Mock treatment NA 24hrs GSM4432384 Series2_A549_Mock_2 CoV002-mock2-indexG2_S2 Mock treated A549 cells homo_sapiens human A549 NA Lung adenocarcinoma Mock treatment NA 24hrs GSM4432385 Series2_A549_Mock_3 CoV002-mock1-indexG1_S1 Mock treated A549 cells homo_sapiens human A549 NA Lung adenocarcinoma Mock treatment NA 24hrs GSM4432386 Series2_A549_SARS-CoV-2_1 CoV002-CoV2-3-indexG6_S6 SARS-CoV-2 infected A549 cells homo_sapiens human A549 NA Lung adenocarcinoma SARS-CoV-2 infected (MOI 0.2) USA-WA1/2020 24hrs GSM4432387 Series2_A549_SARS-CoV-2_2 CoV002-CoV2-2-indexG5_S5 SARS-CoV-2 infected A549 cells homo_sapiens human A549 NA Lung adenocarcinoma SARS-CoV-2 infected (MOI 0.2) USA-WA1/2020 24hrs GSM4432388 Series2_A549_SARS-CoV-2_3 CoV002-CoV2-1-indexG4_S4 SARS-CoV-2 infected A549 cells homo_sapiens human A549 NA Lung adenocarcinoma SARS-CoV-2 infected (MOI 0.2) USA-WA1/2020 24hrs GSM4432389 Series3_A549_Mock_1 svRNA184-mock-3-indexF3_S15 Mock treated A549 cells homo_sapiens human A549 NA Lung adenocarcinoma Mock treatment NA 24hrs GSM4432390 Series3_A549_Mock_2 svRNA184-mock-1-indexF1_S13 Mock treated A549 cells homo_sapiens human A549 NA Lung adenocarcinoma Mock treatment NA 24hrs GSM4432391 Series3_A549_RSV_1 svRNA184-RSV-3-indexH9_S18 RSV infected A549 cells homo_sapiens human A549 NA Lung adenocarcinoma RSV infected (MOI 15) A2 24hrs GSM4432392 Series3_A549_RSV_2 svRNA184-RSV-1-indexF4_S16 RSV infected A549 cells homo_sapiens human A549 NA Lung adenocarcinoma RSV infected (MOI 15) A2 24hrs GSM4432393 Series4_A549_Mock_1 3-9-mock1-13_S20 Mock treated A549 cells homo_sapiens human A549 NA Lung adenocarcinoma Mock treatment NA 09hrs GSM4432394 Series4_A549_Mock_2 3-9-mock2-14_S1 Mock treated A549 cells homo_sapiens human A549 NA Lung adenocarcinoma Mock treatment NA 09hrs GSM4432395 Series4_A549_IAV_1 3-9-wt1-15_S2 IAV infected A549 cells homo_sapiens human A549 NA Lung adenocarcinoma IAV infected (MOI 5) A/Puerto Rico/8/1934 (H1N1) 09hrs GSM4432396 Series4_A549_IAV_2 3-9-wt2-16_S16 IAV infected A549 cells homo_sapiens human A549 NA Lung adenocarcinoma IAV infected (MOI 5) A/Puerto Rico/8/1934 (H1N1) 09hrs GSM4432397 Series5_A549_Mock_1 CoV_A549-mock3 Mock treated A549 cells homo_sapiens human A549 NA Lung adenocarcinoma Mock treatment NA 24hrs GSM4462336 Series5_A549_Mock_2 CoV_A549-mock2 Mock treated A549 cells homo_sapiens human A549 NA Lung adenocarcinoma Mock treatment NA 24hrs GSM4462337 Series5_A549_Mock_3 CoV_A549-mock1 Mock treated A549 cells homo_sapiens human A549 NA Lung adenocarcinoma Mock treatment NA 24hrs GSM4462338 Series5_A549_SARS-CoV-2_1 CoV_A549-SARSCoV2-3 SARS-CoV-2 infected A549 cells homo_sapiens human A549 NA Lung adenocarcinoma SARS-CoV-2 infected (MOI 2) USA-WA1/2020 24hrs GSM4462339 Series5_A549_SARS-CoV-2_2 CoV_A549-SARSCoV2-2 SARS-CoV-2 infected A549 cells homo_sapiens human A549 NA Lung adenocarcinoma SARS-CoV-2 infected (MOI 2) USA-WA1/2020 24hrs GSM4462340 Series5_A549_SARS-CoV-2_3 CoV_A549-SARSCoV2-1 SARS-CoV-2 infected A549 cells homo_sapiens human A549 NA Lung adenocarcinoma SARS-CoV-2 infected (MOI 2) USA-WA1/2020 24hrs GSM4462341 Series6_A549-ACE2_Mock_1 A549-Adeno-GFP-ACE2-mock3 Mock treated A549 cells trasnduced with a vector expressing human ACE2 homo_sapiens human A549-ACE2 NA Lung adenocarcinoma Mock treatment NA 24hrs GSM4462342 Series6_A549-ACE2_Mock_2 A549-Adeno-GFP-ACE2-mock2 Mock treated A549 cells trasnduced with a vector expressing human ACE2 homo_sapiens human A549-ACE2 NA Lung adenocarcinoma Mock treatment NA 24hrs GSM4462343 Series6_A549-ACE2_Mock_3 A549-Adeno-GFP-ACE2-mock1 Mock treated A549 cells trasnduced with a vector expressing human ACE2 homo_sapiens human A549-ACE2 NA Lung adenocarcinoma Mock treatment NA 24hrs GSM4462344 Series6_A549-ACE2_SARS-CoV-2_1 A549-Adeno-GFP-ACE2-SARS-CoV2-3 SARS-CoV-2 infected A549 cells trasnduced with a vector expressing human ACE2 homo_sapiens human A549-ACE2 NA Lung adenocarcinoma SARS-CoV-2 infected (MOI 0.2) USA-WA1/2020 24hrs GSM4462345 Series6_A549-ACE2_SARS-CoV-2_2 A549-Adeno-GFP-ACE2-SARS-CoV2-2 SARS-CoV-2 infected A549 cells trasnduced with a vector expressing human ACE2 homo_sapiens human A549-ACE2 NA Lung adenocarcinoma SARS-CoV-2 infected (MOI 0.2) USA-WA1/2020 24hrs GSM4462346 Series6_A549-ACE2_SARS-CoV-2_3 A549-Adeno-GFP-ACE2-SARS-CoV2-1 SARS-CoV-2 infected A549 cells trasnduced with a vector expressing human ACE2 homo_sapiens human A549-ACE2 NA Lung adenocarcinoma SARS-CoV-2 infected (MOI 0.2) USA-WA1/2020 24hrs GSM4462347 Series7_Calu3_Mock_1 Calu3-mock3 Mock treated Calu-3 cells homo_sapiens human Calu-3 NA Lung adenocarcinoma Mock treatment NA 24hrs GSM4462348 Series7_Calu3_Mock_2 Calu3-mock2 Mock treated Calu-3 cells homo_sapiens human Calu-3 NA Lung adenocarcinoma Mock treatment NA 24hrs GSM4462349 Series7_Calu3_Mock_3 Calu3-mock1 Mock treated Calu-3 cells homo_sapiens human Calu-3 NA Lung adenocarcinoma Mock treatment NA 24hrs GSM4462350 Series7_Calu3_SARS-CoV-2_1 Calu3-SARSCoV2-3 SARS-CoV-2 infected Calu-3 cells homo_sapiens human Calu-3 NA Lung adenocarcinoma SARS-CoV-2 infected (MOI 2) USA-WA1/2020 24hrs GSM4462351 Series7_Calu3_SARS-CoV-2_2 Calu3-SARSCoV2-2 SARS-CoV-2 infected Calu-3 cells homo_sapiens human Calu-3 NA Lung adenocarcinoma SARS-CoV-2 infected (MOI 2) USA-WA1/2020 24hrs GSM4462352 Series7_Calu3_SARS-CoV-2_3 Calu3-SARSCoV2-1 SARS-CoV-2 infected Calu-3 cells homo_sapiens human Calu-3 NA Lung adenocarcinoma SARS-CoV-2 infected (MOI 2) USA-WA1/2020 24hrs GSM4462353 Series8_A549_Mock_1 RSV_A549-mock3 Mock treated A549 cells homo_sapiens human A549 NA Lung adenocarcinoma Mock treatment NA 24hrs GSM4462354 Series8_A549_Mock_2 RSV_A549-mock2 Mock treated A549 cells homo_sapiens human A549 NA Lung adenocarcinoma Mock treatment NA 24hrs GSM4462355 Series8_A549_Mock_3 RSV_A549-mock1 Mock treated A549 cells homo_sapiens human A549 NA Lung adenocarcinoma Mock treatment NA 24hrs GSM4462356 Series8_A549_RSV_1 RSV_A549-RSV-MOI2-3 RSV infected A549 cells homo_sapiens human A549 NA Lung adenocarcinoma RSV infected (MOI 2) A2 24hrs GSM4462357 Series8_A549_RSV_2 RSV_A549-RSV-MOI2-2 RSV infected A549 cells homo_sapiens human A549 NA Lung adenocarcinoma RSV infected (MOI 2) A2 24hrs GSM4462358 Series8_A549_RSV_3 RSV_A549-RSV-MOI2-1 RSV infected A549 cells homo_sapiens human A549 NA Lung adenocarcinoma RSV infected (MOI 2) A2 24hrs GSM4462359 Series8_A549_HPIV3_3 A549-HPIV3-MOI2-1-indexD1 HPIV3 infected A549 cells homo_sapiens human A549 NA Lung adenocarcinoma HPIV3 infected (MOI 3) JS 24hrs GSM4462360 Series8_A549_HPIV3_2 A549-HPIV3-MOI2-2-indexD2 HPIV3 infected A549 cells homo_sapiens human A549 NA Lung adenocarcinoma HPIV3 infected (MOI 3) JS 24hrs GSM4462361 Series8_A549_HPIV3_1 A549-HPIV3-MOI2-3-indexD3 HPIV3 infected A549 cells homo_sapiens human A549 NA Lung adenocarcinoma HPIV3 infected (MOI 3) JS 24hrs GSM4462362 Series9_NHBE_Mock_1 NHBE-Mock-1 Mock treated NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells Mock treatment NA 12hrs GSM4462363 Series9_NHBE_Mock_2 NHBE-Mock-2 Mock treated NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells Mock treatment NA 12hrs GSM4462364 Series9_NHBE_Mock_3 NHBE-Mock-3 Mock treated NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells Mock treatment NA 12hrs GSM4462365 Series9_NHBE_Mock_4 NHBE-Mock-4 Mock treated NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells Mock treatment NA 12hrs GSM4462366 Series9_NHBE_IAV_1 IAV-LD-1 IAV infected NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells IAV infected (MOI 3) A/Puerto Rico/8/1934 (H1N1) 12hrs GSM4462367 Series9_NHBE_IAV_2 IAV-LD-2 IAV infected NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells IAV infected (MOI 3) A/Puerto Rico/8/1934 (H1N1) 12hrs GSM4462368 Series9_NHBE_IAV_3 IAV-LD-3 IAV infected NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells IAV infected (MOI 3) A/Puerto Rico/8/1934 (H1N1) 12hrs GSM4462369 Series9_NHBE_IAV_4 IAV-LD-4 IAV infected NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells IAV infected (MOI 3) A/Puerto Rico/8/1934 (H1N1) 12hrs GSM4462370 Series9_NHBE_IAVdNS1_1 dNS1-LD-1 IAVdNS1 infected NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells IAVdNS1 infected (MOI 3) A/Puerto Rico/8/1934 (H1N1) (dNS1) 12hrs GSM4462371 Series9_NHBE_IAVdNS1_2 dNS1-LD-2 IAVdNS1 infected NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells IAVdNS1 infected (MOI 3) A/Puerto Rico/8/1934 (H1N1) (dNS1) 12hrs GSM4462372 Series9_NHBE_IAVdNS1_3 dNS1-LD-3 IAVdNS1 infected NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells IAVdNS1 infected (MOI 3) A/Puerto Rico/8/1934 (H1N1) (dNS1) 12hrs GSM4462373 Series9_NHBE_IAVdNS1_4 dNS1-LD-4 IAVdNS1 infected NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells IAVdNS1 infected (MOI 3) A/Puerto Rico/8/1934 (H1N1) (dNS1) 12hrs GSM4462374 Series9_NHBE_IFNB_4h_1 IFN_4_1 human IFNB treated NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells human IFNB treatment (100U/ml) NA 04hrs GSM4462375 Series9_NHBE_IFNB_4h_2 IFN_4_2 human IFNB treated NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells human IFNB treatment (100U/ml) NA 04hrs GSM4462376 Series9_NHBE_IFNB_6h_1 IFN_6_1 human IFNB treated NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells human IFNB treatment (100U/ml) NA 06hrs GSM4462377 Series9_NHBE_IFNB_6h_2 IFN_6_2 human IFNB treated NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells human IFNB treatment (100U/ml) NA 06hrs GSM4462378 Series9_NHBE_IFNB_12h_1 IFN_12_1 human IFNB treated NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells human IFNB treatment (100U/ml) NA 12hrs GSM4462379 Series9_NHBE_IFNB_12h_2 IFN_12_2 human IFNB treated NHBE cells homo_sapiens human primary NHBE NA primary human bronchial epithelial cells human IFNB treatment (100U/ml) NA 12hrs GSM4462380 Series15_HealthyLungBiopsy_2 Lung25220-77yearsold-male-GB1-indD11 Lung biopsy for heatly negative control homo_sapiens human NA healthy 77 years old, male Lung Biopsy NA NA NA GSM4462413 Series15_HealthyLungBiopsy_1 Lunng8-22839-72yearsold-male-GB2-indD12 Lung biopsy for heatly negative control homo_sapiens human NA healthy 72 years old, male Lung Biopsy NA NA NA GSM4462414 Series15_COVID19Lung_2 COVID-1-Cornell-indexC10 Lung sample from postmortem COVID-19 patient homo_sapiens human NA COVID-19 deceased patient, >60 years old male Lung Biopsy NA NA NA GSM4462415 Series15_COVID19Lung_1 COVID-2-Cornell-indexC11 Lung sample from postmortem COVID-19 patient homo_sapiens human NA COVID-19 deceased patient, >60 years old male Lung Biopsy NA NA NA GSM4462416 Series16_A549-ACE2_Mock_1 BN1-indexA1 Mock treated A549 cells trasnduced with a vector expressing human ACE2 homo_sapiens human A549-ACE2 NA Lung adenocarcinoma Mock treatment NA NA GSM4486157 Series16_A549-ACE2_Mock_2 BN2-indexA2 Mock treated A549 cells trasnduced with a vector expressing human ACE2 homo_sapiens human A549-ACE2 NA Lung adenocarcinoma Mock treatment NA NA GSM4486158 Series16_A549-ACE2_Mock_3 BN3-IndexA3 Mock treated A549 cells trasnduced with a vector expressing human ACE2 homo_sapiens human A549-ACE2 NA Lung adenocarcinoma Mock treatment NA NA GSM4486159 Series16_A549-ACE2_SARS-CoV-2_1 BN4-indexA4 SARS-CoV-2 infected A549 cells trasnduced with a vector expressing human ACE2 homo_sapiens human A549-ACE2 NA Lung adenocarcinoma SARS-CoV-2 infected (MOI 2) USA-WA1/2020 24hrs GSM4486160 Series16_A549-ACE2_SARS-CoV-2_2 BN5-indexA5 SARS-CoV-2 infected A549 cells trasnduced with a vector expressing human ACE2 homo_sapiens human A549-ACE2 NA Lung adenocarcinoma SARS-CoV-2 infected (MOI 2) USA-WA1/2020 24hrs GSM4486161 Series16_A549-ACE2_SARS-CoV-2_3 BN6-indexA6 SARS-CoV-2 infected A549 cells trasnduced with a vector expressing human ACE2 homo_sapiens human A549-ACE2 NA Lung adenocarcinoma SARS-CoV-2 infected (MOI 2) USA-WA1/2020 24hrs GSM4486162 Series16_A549-ACE2_SARS-CoV-2_Rux_1 BN7-indexA7 SARS-CoV-2 infected A549 cells trasnduced with a vector expressing human ACE2 (1hr after Ruxolitinib pre-treatment) homo_sapiens human A549-ACE2 NA Lung adenocarcinoma 1hr Ruxolitinib pretreat + SARS-CoV-2 infected (MOI 2) USA-WA1/2020 24hrs GSM4486163 Series16_A549-ACE2_SARS-CoV-2_Rux_2 BN8-indexA8 SARS-CoV-2 infected A549 cells trasnduced with a vector expressing human ACE2 (1hr after Ruxolitinib pre-treatment) homo_sapiens human A549-ACE2 NA Lung adenocarcinoma 1hr Ruxolitinib pretreat + SARS-CoV-2 infected (MOI 2) USA-WA1/2020 24hrs GSM4486164 Series16_A549-ACE2_SARS-CoV-2_Rux_3 BN9-indexA9 SARS-CoV-2 infected A549 cells trasnduced with a vector expressing human ACE2 (1hr after Ruxolitinib pre-treatment) homo_sapiens human A549-ACE2 NA Lung adenocarcinoma 1hr Ruxolitinib pretreat + SARS-CoV-2 infected (MOI 2) USA-WA1/2020 24hrs GSM4486165 Series10_FerretNW_Ctl_d1_1 MfNL_Gr4_d1_870 Mock treated 4 month old Ferret Mustela_putorius_furo ferret NA NA Nasal Wash Mock treatment NA day1 GSM4462381 Series10_FerretNW_Ctl_d1_2 MfNL_Gr4_d1_873 Mock treated 4 month old Ferret Mustela_putorius_furo ferret NA NA Nasal Wash Mock treatment NA day1 GSM4462382 Series10_FerretNW_SARS-CoV-2_d1_1 MfNL_Gr2_d1_872 SARS-CoV-2 infected 4 month old Ferret Mustela_putorius_furo ferret NA NA Nasal Wash SARS-CoV-2 infected (5E4 PFU) USA-WA1/2020 day1 GSM4462383 Series10_FerretNW_SARS-CoV-2_d1_2 MfNL_Gr3_d1_877 SARS-CoV-2 infected 4 month old Ferret Mustela_putorius_furo ferret NA NA Nasal Wash SARS-CoV-2 infected (5E4 PFU) USA-WA1/2020 day1 GSM4462384 Series11_FerretNW_Ctl_d3_1 MfNL_Gr4_d3_870 Mock treated 4 month old Ferret Mustela_putorius_furo ferret NA NA Nasal Wash Mock treatment NA day3 GSM4462385 Series11_FerretNW_Ctl_d3_2 MfNL_Gr4_d3_873 Mock treated 4 month old Ferret Mustela_putorius_furo ferret NA NA Nasal Wash Mock treatment NA day3 GSM4462386 Series11_FerretNW_SARS-CoV-2_d3_1 MfNL_Gr2_d3_872 SARS-CoV-2 infected 4 month old Ferret Mustela_putorius_furo ferret NA NA Nasal Wash SARS-CoV-2 infected (5E4 PFU) USA-WA1/2020 day3 GSM4462387 Series11_FerretNW_SARS-CoV-2_d3_2 MfNL_Gr3_d3_877 SARS-CoV-2 infected 4 month old Ferret Mustela_putorius_furo ferret NA NA Nasal Wash SARS-CoV-2 infected (5E4 PFU) USA-WA1/2020 day3 GSM4462388 Series12_FerretNW_Ctl_d7_1 Mf_NL_Gr4_d7_870 Mock treated 4 month old Ferret Mustela_putorius_furo ferret NA NA Nasal Wash Mock treatment NA day7 GSM4462389 Series12_FerretNW_Ctl_d7_2 Mf_NL_Gr4_d7_873 Mock treated 4 month old Ferret Mustela_putorius_furo ferret NA NA Nasal Wash Mock treatment NA day7 GSM4462390 Series12_FerretNW_SARS-CoV-2_d7_1 Mf_NL_Gr3_d7_376 SARS-CoV-2 infected 4 month old Ferret Mustela_putorius_furo ferret NA NA Nasal Wash SARS-CoV-2 infected (5E4 PFU) USA-WA1/2020 day7 GSM4462391 Series12_FerretNW_SARS-CoV-2_d7_2 Mf_NL_Gr3_d7_877 SARS-CoV-2 infected 4 month old Ferret Mustela_putorius_furo ferret NA NA Nasal Wash SARS-CoV-2 infected (5E4 PFU) USA-WA1/2020 day7 GSM4462392 Series12_FerretNW_IAV_d7_1 pH1N1-d7-nw-F5572 IAV infected 4 month old Ferret Mustela_putorius_furo ferret NA NA Nasal Wash IAV infected (1E5 PFU) A/California/04/2009 (pH1N1) day7 GSM4462393 Series12_FerretNW_IAV_d7_2 pH1N1-d7-nw-F5576 IAV infected 4 month old Ferret Mustela_putorius_furo ferret NA NA Nasal Wash IAV infected (1E5 PFU) A/California/04/2009 (pH1N1) day7 GSM4462394 Series13_FerretNW_Ctl_d14_1 Naive-F873-14dpi-indexF9 Mock treated 4 month old Ferret Mustela_putorius_furo ferret NA NA Nasal Wash Mock treatment NA day14 GSM4462395 Series13_FerretNW_Ctl_d14_2 Naive-F873-B-14dpi-indexF7 Mock treated 4 month old Ferret Mustela_putorius_furo ferret NA NA Nasal Wash Mock treatment NA day14 GSM4462396 Series13_FerretNW_SARS-CoV-2_d14_1 USA-WA1-2020-F876-14dpi-indexE7 SARS-CoV-2 infected 4 month old Ferret Mustela_putorius_furo ferret NA NA Nasal Wash SARS-CoV-2 infected (5E4 PFU) USA-WA1/2020 day14 GSM4462397 Series13_FerretNW_SARS-CoV-2_d14_2 USA-WA1-2020-F877-14dpi-indexE9 SARS-CoV-2 infected 4 month old Ferret Mustela_putorius_furo ferret NA NA Nasal Wash SARS-CoV-2 infected (5E4 PFU) USA-WA1/2020 day14 GSM4462398 Series14_FerretTrachea_Ctl_d3_1 Mf-trachea-mock-3d-F751 Mock treated 4 month old Ferret Mustela_putorius_furo ferret NA NA trachea Mock treatment NA day3 GSM4462399 Series14_FerretTrachea_Ctl_d3_2 Mf-trachea-mock-3d-F752 Mock treated 4 month old Ferret Mustela_putorius_furo ferret NA NA trachea Mock treatment NA day3 GSM4462400 Series14_FerretTrachea_Ctl_d3_3 Mf-trachea-naive-3d-F751 Mock treated 4 month old Ferret Mustela_putorius_furo ferret NA NA trachea Mock treatment NA day3 GSM4462401 Series14_FerretTrachea_Ctl_d3_4 Mf-trachea-naive-3d-F752 Mock treated 4 month old Ferret Mustela_putorius_furo ferret NA NA trachea Mock treatment NA day3 GSM4462402 Series14_FerretTrachea_SARS-CoV-2_d3_1 Mf-Tr-16 SARS-CoV-2 infected 4 month old Ferret Mustela_putorius_furo ferret NA NA trachea SARS-CoV-2 infected (5E4 PFU) USA-WA1/2020 day3 GSM4462403 Series14_FerretTrachea_SARS-CoV-2_d3_2 Mf-Tr-17 SARS-CoV-2 infected 4 month old Ferret Mustela_putorius_furo ferret NA NA trachea SARS-CoV-2 infected (5E4 PFU) USA-WA1/2020 day3 GSM4462404 Series14_FerretTrachea_SARS-CoV-2_d3_3 Mf-Tr-18 SARS-CoV-2 infected 4 month old Ferret Mustela_putorius_furo ferret NA NA trachea SARS-CoV-2 infected (5E4 PFU) USA-WA1/2020 day3 GSM4462405 Series14_FerretTrachea_SARS-CoV-2_d3_4 Mf-Tr-19 SARS-CoV-2 infected 4 month old Ferret Mustela_putorius_furo ferret NA NA trachea SARS-CoV-2 infected (5E4 PFU) USA-WA1/2020 day3 GSM4462406 Series14_FerretTrachea_IAV_d3_1 Mf-trachea-H3N2-3d-F531-1 IAV infected 4 month old Ferret Mustela_putorius_furo ferret NA NA trachea IAV infected (1E5 PFU) A/Texas/71/2017, clade 3C.3a (H3N2) day3 GSM4462407 Series14_FerretTrachea_IAV_d3_2 Mf-trachea-H3N2-3d-F531-2 IAV infected 4 month old Ferret Mustela_putorius_furo ferret NA NA trachea IAV infected (1E5 PFU) A/Texas/71/2017, clade 3C.3a (H3N2) day3 GSM4462408 Series14_FerretTrachea_IAV_d3_3 Mf-trachea-H3N2-3d-F532-1 IAV infected 4 month old Ferret Mustela_putorius_furo ferret NA NA trachea IAV infected (1E5 PFU) A/Texas/71/2017, clade 3C.3a (H3N2) day3 GSM4462409 Series14_FerretTrachea_IAV_d3_4 Mf-trachea-H3N2-3d-F532-2 IAV infected 4 month old Ferret Mustela_putorius_furo ferret NA NA trachea IAV infected (1E5 PFU) A/Texas/71/2017, clade 3C.3a (H3N2) day3 GSM4462410 Series14_FerretTrachea_IAV_d3_5 Mf-trachea-H3N2-3d-F533-1 IAV infected 4 month old Ferret Mustela_putorius_furo ferret NA NA trachea IAV infected (1E5 PFU) A/Texas/71/2017, clade 3C.3a (H3N2) day3 GSM4462411 Series14_FerretTrachea_IAV_d3_6 Mf-trachea-H3N2-3d-F533-2 IAV infected 4 month old Ferret Mustela_putorius_furo ferret NA NA trachea IAV infected (1E5 PFU) A/Texas/71/2017, clade 3C.3a (H3N2) day3 GSM4462412