# Introduction ---- # The goal of this short script to it make sure you are able to read the count data and the study design for the COVID hackdash into your R environment # We only need a single package library(tidyverse) # Begin by reading in study design that includes all info for both human and ferret samples targets <- read_tsv("covid_metadata.txt") # then read in the human covid data and convert to a matrix with gene symbols as rownames human_covid_data <- read_tsv("GSE147507_RawReadCounts_Human.tsv") human_covid_data <- as.matrix(column_to_rownames(human_covid_data, "X1")) # repeat for the ferret covid data ferret_covid_data <- read_tsv("GSE147507_RawReadCounts_Ferret.tsv") ferret_covid_data <- as.matrix(column_to_rownames(ferret_covid_data, "X1")) # Now proceed with your exploration and analysis of the data!